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reference/SUMMARY/index.html

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reference/stands/align/index.html

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reference/stands/anomaly/index.html

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reference/stands/configs/index.html

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reference/stands/evaluate/SGD/index.html

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reference/stands/evaluate/eval/index.html

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reference/stands/evaluate/index.html

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reference/stands/index.html

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reference/stands/model/GMM/index.html

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reference/stands/model/backbone/extractor/index.html

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reference/stands/model/backbone/image/index.html

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reference/stands/model/backbone/index.html

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reference/stands/model/backbone/layer/index.html

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reference/stands/model/cluster/index.html

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reference/stands/model/discriminator/index.html

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reference/stands/model/generator/index.html

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reference/stands/model/index.html

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reference/stands/pretrain/index.html

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reference/stands/subtype/index.html

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sitemap.xml

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<p>All experimental datasets involved in this paper are available from their respective original sources: the 10x-Visium datasets of healthy human breast tissues (10x-hNB datasets) are available at <a href="https://cellxgene.cziscience.com/collections/4195ab4c-20bd-4cd3-8b3d-65601277e731">CELLxGENE</a>; The 10x-Visium datasets of human breast cancer tissues (10x-hBC datasets) are available at <a href="https://github.com/almaan/her2st/tree/master">github</a>; The 10x-Visium datasets of human primary sclerosing cholangitis tissue (10x-hPSC datasets) and human liver caudate lobe tissue are available at <a href="https://cellxgene.cziscience.com/collections/0c8a364b-97b5-4cc8-a593-23c38c6f0ac5">CELLxGENE</a>; The 10x-Visium datasets of human renal cell cancer tissue (10x-hRCC datasets) are available at <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE175540">Gene Expression Omnibus</a>; The scRNA-seq dataset of human pancreatic ductal (sc-hPD) and 10x-Visium datasets of the human pancreatic ductal adenocarcinomas (10x-hPDAC) are available at <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111672">Gene Expression Omnibus</a>; The slide-seqV2 datasets of mouse embryo tissues (ssq-mEmb datasets) are available at <a href="https://cellxgene.cziscience.com/collections/d74b6979-efba-47cd-990a-9d80ccf29055">CELLxGENE</a>; The Stereo-seq datasets of mouse embryo tissue (Stereo-mEmb datasets) are available at <a href="https://db.cngb.org/stomics/mosta/">STOmicsDB</a>. We also provide organized and processed small datasets to demo the our code and tutorials. You can download the demo datasets from <a href="https://drive.google.com/file/d/1_eaOOiBfJtM-OZ3Ptdkylubn5cD17aUs/view?usp=drive_link">Google Drive</a>.</p>
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<h2 id="getting-help">Getting help<a class="headerlink" href="#getting-help" title="Permanent link">&para;</a></h2>
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<p>See the tutorial for more complete documentation of all the functions of STANDS. For questions or comments, please use the <a href="https://github.com/Catchxu/STANDS/issues">GitHub issues</a>.</p>
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<p>Please see the tutorial for more complete documentation of all the functions of STANDS. For any questions or comments, please use the <a href="https://github.com/Catchxu/STANDS/issues">GitHub issues</a> or
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directly contact Wenlin Li at the email: <a href="&#109;&#97;&#105;&#108;&#116;&#111;&#58;&#107;&#97;&#105;&#99;&#104;&#101;&#110;&#120;&#117;&#51;&#53;&#56;&#64;&#103;&#109;&#97;&#105;&#108;&#46;&#99;&#111;&#109;">&#107;&#97;&#105;&#99;&#104;&#101;&#110;&#120;&#117;&#51;&#53;&#56;&#64;&#103;&#109;&#97;&#105;&#108;&#46;&#99;&#111;&#109;</a>.</p>
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<h2 id="tested-environment">Tested environment<a class="headerlink" href="#tested-environment" title="Permanent link">&para;</a></h2>
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<h3 id="environment-1">Environment 1<a class="headerlink" href="#environment-1" title="Permanent link">&para;</a></h3>
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<span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">June 2, 2024</span>
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<span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">June 8, 2024</span>
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